Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9928142 chr16:89581924 T/C 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs9928538 chr16:1695248 C/T 0 176 25.4 15.85 2.93 KM Plot
PCPG rs9931446 chr16:89576086 T/G 0.000356 176 26.78 25.28 19.53 KM Plot
PCPG rs9933059 chr16:85218939 A/G 0.0001 178 24.7 31.9 17.83 KM Plot
PCPG rs9933064 chr16:56405787 T/C 0 176 25.28 30.33 3.17 KM Plot
PCPG rs9933881 chr16:1740691 T/C 1.68E-11 174 25.53 19.3 4.52 KM Plot
PCPG rs9936790 chr16:25665180 C/T 2.16E-8 176 25.47 26.57 8.12 KM Plot
PCPG rs9940288 chr16:1692902 C/T 0 178 25.28 28.45 2.08 KM Plot
PCPG rs9940875 chr16:1722957 C/T 0 178 25.53 18.75 2.93 KM Plot
PCPG rs9941003 chr16:1687741 G/A 0 178 25.47 18.2 2.93 KM Plot
PCPG rs9949300 chr18:74538009 G/C 6.2E-9 176 25.53 25.17 10.17 KM Plot
PCPG rs9949466 chr18:44142269 A/G 1.09E-7 178 25 26.88 19.87 KM Plot
PCPG rs9950669 chr18:74556159 G/A 4.53E-9 178 25.6 25.52 10.17 KM Plot
PCPG rs9958971 chr18:74533651 G/A 7.67E-9 174 25.6 24.83 10.17 KM Plot
PCPG rs9960244 chr18:44142238 C/T 1.01E-7 176 25.17 27.4 19.87 KM Plot